LINC00397

RNA expression — cross-omics
Cross-omicsRNA → FUNCTION-RNAPatientPairwise association · TCGA cohorts

Across TCGA patient cohorts, LINC00397 RNA expression is significantly associated with the go_rna of many other GO terms, with 5,161 significant associations in total. KIRC shows the largest number of these associations.

The most reproducible LINC00397-associated GO terms across cancer lineages are Base-excision repair, tRNA processing, and Protein K11-linked ubiquitination. Each is linked with LINC00397 in more than 13 cancer types. Because this analysis shows association rather than direction, both LINC00397-to-partner and partner-to-LINC00397 results are reported.

Each partner links to its own Q-omics profile.

RNA expression associated GO terms by consensus

Ranked by combined sampling and lineage consensus. X-score (LINC00397→partner) and Y-score (partner→LINC00397) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.
LineagePartner GO termX-scoreY-scorep(X)p(Y)Sampling consensusLineage consensus
STADBase-excision repair →+0.056+0.123<.001<.001314
STADtRNA processing →+0.058+0.168<.001<.001313
STADProtein K11-linked ubiquitination →+0.052+0.168<.001<.001312
STADMitochondrial gene expression →+0.066+0.137<.001<.001312
STADDNA-templated DNA replication maintenance of fidelity →+0.060+0.122<.001<.001312
STADtRNA metabolic process →+0.058+0.112<.001<.001312
Each partner links to its Q-omics profile. Showing the 6 strongest of 5,161 associations by consensus.

Exploration