LINC00388

Across TCGA patient cohorts, LINC00388 RNA expression is significantly associated with the go_rna of many other GO terms, with 5,725 significant associations in total. STAD shows the largest number of these associations.

The most reproducible LINC00388-associated GO terms across cancer lineages are Establishment of protein localization to membrane, tRNA metabolic process, and Regulation of cell projection assembly. Each is linked with LINC00388 in more than 9 cancer types. Because this analysis shows association rather than direction, both LINC00388-to-partner and partner-to-LINC00388 results are reported.

Each partner links to its own Q-omics profile. The box plot shows the strongest example, Establishment of protein localization to membrane grouped by LINC00388-low versus LINC00388-high in COAD.

RNA expression associated GO terms by consensus

Ranked by combined sampling and lineage consensus. X-score (LINC00388→partner) and Y-score (partner→LINC00388) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner GO term	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
COAD	Establishment of protein localization to membrane →	+0.139	+0.039	<.001	.005	1	10
STAD	tRNA metabolic process →	+0.117	+0.025	<.001	<.001	3	8
STAD	Regulation of cell projection assembly →	+0.106	+0.026	<.001	<.001	3	7
STAD	Porphyrin-containing compound metabolic process →	+0.097	+0.044	<.001	<.001	3	7
STAD	Regulation of mRNA export from nucleus →	+0.104	+0.044	<.001	<.001	3	7
STAD	RNA methylation →	+0.107	+0.023	<.001	<.001	3	7

Each partner links to its Q-omics profile. Showing the 6 strongest of 5,725 associations by consensus.

Establishment of protein localization to membrane by LINC00388 expression — COAD

Explore this box plot interactively →