Across TCGA patient cohorts, LINC00339 RNA expression is significantly associated with the protein abundance of many other proteins, with 17,187 significant associations in total. LSCC shows the largest number of these associations.

The most reproducible LINC00339-associated proteins across cancer lineages are RPA1, STAG2, and RAD21. Each is linked with LINC00339 in more than 6 cancer types. Because this analysis shows association rather than direction, both LINC00339-to-partner and partner-to-LINC00339 results are reported.

Each partner links to its own Q-omics profile.

RNA expression associated proteins by consensus

Ranked by combined sampling and lineage consensus. X-score (LINC00339→partner) and Y-score (partner→LINC00339) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner protein	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
OV	RPA1 →	+0.290	+0.499	.002	.002	3	7
GBM	STAG2 →	+0.449	+0.394	<.001	<.001	3	7
GBM	RAD21 →	+0.239	+0.262	<.001	<.001	3	6
GBM	UBTF →	+0.364	+0.336	.001	.005	3	6
HNSC	TOP2B_S1552 →	+0.510	+0.628	<.001	<.001	3	6
GBM	GABPA →	+0.337	+0.309	<.001	.001	3	6

Each partner links to its Q-omics profile. Showing the 6 strongest of 17,187 associations by consensus.

Exploration

LINC00339 survival (RNA) · tumor vs normal (RNA) · all LINC00339 data types