LINC00301

Across TCGA patient cohorts, LINC00301 mutation is significantly associated with the RNA expression of many other genes, with 24 significant associations in total. UCEC shows the largest number of these associations.

The most reproducible LINC00301-associated genes across cancer lineages are MIR4296, COX6CP3, and SMIM11P1. Each is linked with LINC00301 in more than 1 cancer types. Because this analysis shows association rather than direction, both LINC00301-to-partner and partner-to-LINC00301 results are reported.

Each partner links to its own Q-omics profile. The box plot shows the strongest example, MIR4296 grouped by LINC00301-low versus LINC00301-high in UCEC.

mutation associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (LINC00301→partner) and Y-score (partner→LINC00301) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner gene	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
UCEC	MIR4296 →	+0.978	+4.130	.001	.004	3	1
UCEC	COX6CP3 →	+0.342	+4.262	<.001	.003	3	1
UCEC	SMIM11P1 →	+0.403	+3.969	.003	.005	3	1
UCEC	RNA5SP405 →	+0.942	+4.997	<.001	.003	3	1
UCEC	RNA5SP199 →	+1.417	+4.262	<.001	.003	3	1
UCEC	RNA5SP50 →	+1.829	+4.352	<.001	.008	3	1

Each partner links to its Q-omics profile. Showing the 6 strongest of 24 associations by consensus.

MIR4296 by LINC00301 expression — UCEC

Explore this box plot interactively →