LINC00299

Across TCGA patient cohorts, LINC00299 RNA expression is significantly associated with the protein abundance of many other proteins, with 8,785 significant associations in total. LSCC shows the largest number of these associations.

The most reproducible LINC00299-associated proteins across cancer lineages are SEPTIN1, SEPTIN1_S315, and GIMAP7. Each is linked with LINC00299 in more than 5 cancer types. Because this analysis shows association rather than direction, both LINC00299-to-partner and partner-to-LINC00299 results are reported.

Each partner links to its own Q-omics profile. The scatter plot shows the strongest example, LINC00299 versus SEPTIN1 in UCEC, with a Pearson correlation of 0.34.

RNA expression associated proteins by consensus

Ranked by combined sampling and lineage consensus. X-score (LINC00299→partner) and Y-score (partner→LINC00299) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner protein	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
UCEC	SEPTIN1 →	+0.674	+0.700	<.001	<.001	3	6
LUAD	SEPTIN1_S315 →	+1.004	+0.378	<.001	<.001	3	6
HNSC	GIMAP7 →	+0.616	+0.585	<.001	<.001	3	6
LSCC	IL16 →	+0.653	+0.622	<.001	<.001	3	6
HNSC	TRAF1 →	+0.647	+0.788	<.001	<.001	3	5
UCEC	TRAF3IP3 →	+0.791	+0.579	<.001	.002	3	5

Each partner links to its Q-omics profile. Showing the 6 strongest of 8,785 associations by consensus.

LINC00299 vs SEPTIN1 — UCEC

Explore this scatter interactively →