LINC00244

Across TCGA patient cohorts, LINC00244 RNA expression is significantly associated with the protein abundance of many other proteins, with 8,115 significant associations in total. HNSC shows the largest number of these associations.

The most reproducible LINC00244-associated proteins across cancer lineages are SAMD9, SMC1A, and STAG2. Each is linked with LINC00244 in more than 3 cancer types. Because this analysis shows association rather than direction, both LINC00244-to-partner and partner-to-LINC00244 results are reported.

Each partner links to its own Q-omics profile. The scatter plot shows the strongest example, LINC00244 versus SAMD9 in HNSC, with a Pearson correlation of -0.43.

RNA expression associated proteins by consensus

Ranked by combined sampling and lineage consensus. X-score (LINC00244→partner) and Y-score (partner→LINC00244) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner protein	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
HNSC	SAMD9 →	-0.523	-0.459	<.001	<.001	3	3
LSCC	SMC1A →	+0.257	+0.381	.002	.006	3	3
COAD	STAG2 →	+0.255	+0.317	<.001	.002	3	3
GBM	TSR3 →	-0.278	-0.490	<.001	<.001	3	3
COAD	MYO5A →	-0.251	-0.268	.009	.009	2	4
HNSC	OSTF1 →	-0.229	-0.430	.002	.001	3	3

Each partner links to its Q-omics profile. Showing the 6 strongest of 8,115 associations by consensus.

LINC00244 vs SAMD9 — HNSC

Explore this scatter interactively →