LINC00028

Across TCGA patient cohorts, LINC00028 RNA expression is significantly associated with the go_rna of many other GO terms, with 7,093 significant associations in total. STAD shows the largest number of these associations.

The most reproducible LINC00028-associated GO terms across cancer lineages are Response to tumor necrosis factor, Actin polymerization or depolymerization, and Muscle cell proliferation. Each is linked with LINC00028 in more than 22 cancer types. Because this analysis shows association rather than direction, both LINC00028-to-partner and partner-to-LINC00028 results are reported.

Each partner links to its own Q-omics profile. The box plot shows the strongest example, Response to tumor necrosis factor grouped by LINC00028-low versus LINC00028-high in STAD.

RNA expression associated GO terms by consensus

Ranked by combined sampling and lineage consensus. X-score (LINC00028→partner) and Y-score (partner→LINC00028) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner GO term	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
STAD	Response to tumor necrosis factor →	+0.043	+0.208	<.001	<.001	3	23
STAD	Actin polymerization or depolymerization →	+0.056	+0.215	<.001	<.001	3	22
STAD	Muscle cell proliferation →	+0.044	+0.208	<.001	<.001	3	21
STAD	Mesenchymal cell differentiation →	+0.050	+0.211	<.001	<.001	3	21
STAD	Regulation of chemotaxis →	+0.047	+0.211	<.001	<.001	3	21
STAD	Response to ketone →	+0.046	+0.209	<.001	<.001	3	20

Each partner links to its Q-omics profile. Showing the 6 strongest of 7,093 associations by consensus.

Response to tumor necrosis factor by LINC00028 expression — STAD

Explore this box plot interactively →