Across TCGA patient cohorts, LCNL1 mutation is significantly associated with the RNA expression of many other genes, with 53 significant associations in total. UCEC shows the largest number of these associations.

The most reproducible LCNL1-associated genes across cancer lineages are LINC01848, GEMIN2P2, and CELF2-AS2. Each is linked with LCNL1 in more than 1 cancer types. Because this analysis shows association rather than direction, both LCNL1-to-partner and partner-to-LCNL1 results are reported.

Each partner links to its own Q-omics profile.

mutation associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (LCNL1→partner) and Y-score (partner→LCNL1) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner gene	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
SKCM	LINC01848 →	+0.233	+3.408	<.001	.009	3	2
SKCM	GEMIN2P2 →	+0.052	+3.408	<.001	.009	3	1
SKCM	CELF2-AS2 →	+0.046	+3.979	<.001	.003	3	1
UCEC	MIR4497 →	+0.753	+4.358	<.001	.001	3	1
UCEC	MIR4682 →	+0.893	+3.789	<.001	.002	3	1
UCEC	GTF3C6P3 →	+0.306	+3.818	.004	.005	3	1

Each partner links to its Q-omics profile. Showing the 6 strongest of 53 associations by consensus.

Exploration

LCNL1 survival (RNA) · tumor vs normal (RNA) · all LCNL1 data types