LCN9

RNA expression — cross-omics
Cross-omicsRNA → RNACell-linePairwise association · TCGA cohorts

Across TCGA cell cohorts, LCN9 RNA expression is significantly associated with the RNA expression of many other genes, with 551 significant associations in total. LUNG_NSCLC_LUSC shows the largest number of these associations.

The most reproducible LCN9-associated genes across cancer lineages are TRIM49C, SLC22A9, and CST9. Each is linked with LCN9 in more than 2 cancer types. Because this analysis shows association rather than direction, both LCN9-to-partner and partner-to-LCN9 results are reported.

Each partner links to its own Q-omics profile. The scatter plot shows the strongest example, LCN9 versus TRIM49C in LUNG_NSCLC_LUSC, with a Pearson correlation of 0.54.

RNA expression associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (LCN9→partner) and Y-score (partner→LCN9) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.
LineagePartner geneX-scoreY-scorep(X)p(Y)Sampling consensusLineage consensus
LUNG_NSCLC_LUSCTRIM49C →+0.059+0.027<.001<.00133
URINARY_TRACTSLC22A9 →+0.475+0.834.002.00132
BLOOD_LymphomaCST9 →+0.087+0.014<.001<.00132
BLOOD_LymphomaSPAG11A →+0.070+0.011<.001<.00132
BLOOD_LymphomaEDDM3B →+1.193+0.011<.001<.00132
BLOOD_LymphomaSLC22A10 →+0.617+0.014<.001<.00132
Each partner links to its Q-omics profile. Showing the 6 strongest of 551 associations by consensus.

LCN9 vs TRIM49C — LUNG_NSCLC_LUSC

Per-sample scatter of LCN9 vs TRIM49C in LUNG_NSCLC_LUSC (Pearson r = 0.54).

Explore this scatter interactively →

Exploration