LCMT2

Across TCGA patient cohorts, LCMT2 protein abundance is significantly associated with the protein abundance of many other proteins, with 5,877 significant associations in total. GBM shows the largest number of these associations.

The most reproducible LCMT2-associated proteins across cancer lineages are NCK1, IPO7, and KCTD3_S664. Each is linked with LCMT2 in more than 2 cancer types. Because this analysis shows association rather than direction, both LCMT2-to-partner and partner-to-LCMT2 results are reported.

Each partner links to its own Q-omics profile. The scatter plot shows the strongest example, LCMT2 versus NCK1 in UCEC, with a Pearson correlation of -0.56.

protein abundance associated proteins by consensus

Ranked by combined sampling and lineage consensus. X-score (LCMT2→partner) and Y-score (partner→LCMT2) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner protein	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
UCEC	NCK1 →	-0.302	-0.483	<.001	<.001	3	2
UCEC	IPO7 →	+0.263	+0.632	<.001	.002	3	2
BRCA	KCTD3_S664 →	+0.494	+0.392	.001	<.001	3	2
HNSC	ARHGEF6 →	-0.437	-0.560	<.001	<.001	3	2
GBM	ARL6IP4_S239 →	-0.475	-0.413	<.001	<.001	3	2
OV	MRPL48 →	-0.480	-0.701	.004	.001	3	2

Each partner links to its Q-omics profile. Showing the 6 strongest of 5,877 associations by consensus.

LCMT2 vs NCK1 — UCEC

Explore this scatter interactively →