LCMT1

RNA expression — cross-omics
Cross-omicsRNA → FUNCTION-RNACell-linePairwise association · TCGA cohorts

Across TCGA cell cohorts, LCMT1 RNA expression is significantly associated with the go_rna of many other GO terms, with 3,457 significant associations in total. BLOOD_Leukemia shows the largest number of these associations.

The most reproducible LCMT1-associated GO terms across cancer lineages are Vesicle targeting, rough ER to cis-Golgi, COPII vesicle coating, and COPII-coated vesicle budding. Each is linked with LCMT1 in more than 8 cancer types. Because this analysis shows association rather than direction, both LCMT1-to-partner and partner-to-LCMT1 results are reported.

Each partner links to its own Q-omics profile.

RNA expression associated GO terms by consensus

Ranked by combined sampling and lineage consensus. X-score (LCMT1→partner) and Y-score (partner→LCMT1) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.
LineagePartner GO termX-scoreY-scorep(X)p(Y)Sampling consensusLineage consensus
BONEVesicle targeting, rough ER to cis-Golgi →+0.104+0.474.001<.00139
BONECOPII vesicle coating →+0.074+0.362<.001<.00139
STOMACHCOPII-coated vesicle budding →+0.098+0.580.003.00139
LUNG_SCLCVesicle coating →+0.101+0.431<.001.00639
LIVERProtein localization to nucleolus →-0.139-0.552.004.00738
STOMACHGolgi organization →+0.061+0.452<.001.00138
Each partner links to its Q-omics profile. Showing the 6 strongest of 3,457 associations by consensus.

Exploration