Across TCGA cell cohorts, LCE3A RNA expression is significantly associated with the RNA expression of many other genes, with 125 significant associations in total. CNS shows the largest number of these associations.

The most reproducible LCE3A-associated genes across cancer lineages are SPATA31A7, KRT73, and PRR9. Each is linked with LCE3A in more than 1 cancer types. Because this analysis shows association rather than direction, both LCE3A-to-partner and partner-to-LCE3A results are reported.

Each partner links to its own Q-omics profile.

RNA expression associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (LCE3A→partner) and Y-score (partner→LCE3A) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner gene	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
BONE	SPATA31A7 →	+0.147	+0.339	<.001	<.001	3	2
SOFT_TISSUE	KRT73 →	+0.099	+1.003	<.001	<.001	3	1
SOFT_TISSUE	PRR9 →	+0.198	+0.316	.005	.002	3	1
SOFT_TISSUE	KPRP →	+0.095	+0.365	<.001	<.001	3	1
SOFT_TISSUE	ACCSL →	+0.032	+0.367	.001	<.001	3	1
SOFT_TISSUE	OR6C1 →	+0.857	+0.925	<.001	<.001	3	1

Each partner links to its Q-omics profile. Showing the 6 strongest of 125 associations by consensus.

Exploration

LCE3A survival (RNA) · tumor vs normal (RNA) · all LCE3A data types