KCNF1

Across TCGA patient cohorts, KCNF1 protein abundance is significantly associated with the RNA expression of many other genes, with 146 significant associations in total. GBM shows the largest number of these associations.

The most reproducible KCNF1-associated genes across cancer lineages are SNRPD3, RIN3, and SIGLEC5. Each is linked with KCNF1 in more than 1 cancer types. Because this analysis shows association rather than direction, both KCNF1-to-partner and partner-to-KCNF1 results are reported.

Each partner links to its own Q-omics profile. The scatter plot shows the strongest example, KCNF1 versus SNRPD3 in GBM, with a Pearson correlation of 0.71.

protein abundance associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (KCNF1→partner) and Y-score (partner→KCNF1) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner gene	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
GBM	SNRPD3 →	+0.484	+0.336	.007	.002	3	1
GBM	RIN3 →	-1.037	-0.320	<.001	.006	3	1
GBM	SIGLEC5 →	-0.203	-0.321	.003	.006	3	1
GBM	CRTAM →	-0.416	-0.329	.003	.006	3	1
GBM	DCN →	-1.708	-0.321	.005	.006	3	1
GBM	CD2 →	-2.083	-0.329	.003	.006	3	1

Each partner links to its Q-omics profile. Showing the 6 strongest of 146 associations by consensus.

KCNF1 vs SNRPD3 — GBM

Explore this scatter interactively →