IMPACT

mutation — cross-omics
Cross-omicsMUTATION → MUTATIONCell-linePairwise association · TCGA cohorts

Across TCGA cell cohorts, IMPACT mutation is significantly associated with the mutation status of many other genes, with 1,310 significant associations in total. LARGE_INTESTINE shows the largest number of these associations.

The most reproducible IMPACT-associated genes across cancer lineages are DDHD1, BPNT2, and COQ6. Each is linked with IMPACT in more than 1 cancer types. Because this analysis shows association rather than direction, both IMPACT-to-partner and partner-to-IMPACT results are reported.

Each partner links to its own Q-omics profile. The box plot shows the strongest example, DDHD1 grouped by IMPACT-low versus IMPACT-high in LARGE_INTESTINE.

mutation associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (IMPACT→partner) and Y-score (partner→IMPACT) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.
LineagePartner geneX-scoreY-scorep(X)p(Y)Sampling consensusLineage consensus
LARGE_INTESTINEDDHD1 →+3.007+3.584.008.00812
LARGE_INTESTINEBPNT2 →+3.007+3.584.008.00812
LARGE_INTESTINECOQ6 →+3.007+3.584.008.00812
LARGE_INTESTINETACO1 →+4.329+4.329.001.00112
LARGE_INTESTINESNX27 →+3.007+3.584.008.00812
LARGE_INTESTINERABL3 →+5.329+4.672<.001<.00112
Each partner links to its Q-omics profile. Showing the 6 strongest of 1,310 associations by consensus.

DDHD1 by IMPACT expression — LARGE_INTESTINE

Box plot of DDHD1 in IMPACT-low vs IMPACT-high samples in LARGE_INTESTINE.

Explore this box plot interactively →

Exploration