IGHV3-13

protein abundance — cross-omics
Cross-omicsPROTEIN-MS → RNAPatientPairwise association · TCGA cohorts

Across TCGA patient cohorts, IGHV3-13 protein abundance is significantly associated with the RNA expression of many other genes, with 13,424 significant associations in total. GBM shows the largest number of these associations.

The most reproducible IGHV3-13-associated genes across cancer lineages are SEMA6B, ZNF423, and GSTM5. Each is linked with IGHV3-13 in more than 3 cancer types. Because this analysis shows association rather than direction, both IGHV3-13-to-partner and partner-to-IGHV3-13 results are reported.

Each partner links to its own Q-omics profile.

protein abundance associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (IGHV3-13→partner) and Y-score (partner→IGHV3-13) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.
LineagePartner geneX-scoreY-scorep(X)p(Y)Sampling consensusLineage consensus
LUADSEMA6B →+0.567+0.326.002<.00134
OVZNF423 →+0.844+0.712.003.00234
OVGSTM5 →+0.946+1.078.001.00234
OVNDC1 →-0.591-0.846<.001.00134
GBMFOLR2 →+1.080+0.562<.001<.00134
GBMCR1 →+1.101+0.544<.001<.00134
Each partner links to its Q-omics profile. Showing the 6 strongest of 13,424 associations by consensus.

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