HMGN2P39

associated omics data
high mobility group nucleosomal binding domain 2 pseudogene 39Genealiases: []

Q-omics provides the consensus-scored HMGN2P39 profile across patient tissues and cancer cell-line models. HMGN2P39 expression is associated with patient survival in 13 of 34 cancer types, with the highest sampling consensus in KIRP. Additionally, HMGN2P39 RNA expression shows 7,001 significant gene co-expression associations, with the highest sampling consensus in TGCT. Together, these results highlight KIRP, and TGCT as cancer lineages where HMGN2P39 shows reproducible signals across survival, tumor–normal expression, and patient cross-omics analyses.

Every result is evaluated using two consensus scores. Sampling consensus measures how consistently a finding is reproduced within a cancer lineage across different conditions. Lineage consensus measures how broadly the result is shared across cancer types, distinguishing pan-cancer signals from lineage-specific patterns.

Survival associations

This table summarizes HMGN2P39 survival associations across molecular data types. HMGN2P39 RNA expression shows survival associations in the most cancer types (13). The rightmost column indicates the cancer type with the highest sampling consensus for each molecular layer.
HMGN2P39 data typeSurvival analysisLineage consensusLineage of highest sampling consensus
RNAKaplan–Meier13KIRP (72)view →
This table ranks reproducible HMGN2P39 RNA expression–survival associations across cancer types. High HMGN2P39 expression shows unfavorable associations in KIRP, BLCA, MESO, KICH, COAD and ESCA. The KIRP Kaplan–Meier curve shows clear separation, with the high-expression group declining faster, consistent with the unfavorable association (log-rank p < 0.001). Together, the overview and detailed table identify KIRP as the clearest survival context for HMGN2P39 RNA expression.
LineageMeasureSplitStageAUC1
high
AUC2
low
pSampling consensus
KIRPOSTertileAll0.1660.699<.00172view →
BLCAOSTertileII,III,IV0.4340.633.01363view →
MESOOSTertileIII,IV0.0980.579.00136view →
KICHOSTertileIII,IV0.1780.847<.00127view →
COADDFSTertileII,III,IV0.5820.797.00718view →
ESCADFSQuartileAll0.3400.543.00310view →
Pink = unfavorable, green = favorable. all 13 lineages →

HMGN2P39-KIRP (OS)

Kaplan–Meier survival curve for HMGN2P39 RNA expression in KIRP: high vs low expression groups.

Explore this curve interactively →

Cross-omics associations

This table shows molecular features associated with HMGN2P39 in patient tissues and cancer cell lines. In patient samples, HMGN2P39 shows the broadest associations at the RNA and protein expression levels, with TGCT recurring as the lineage with the largest associated feature set.
Associated data typeStrength (# associated data)Lineage of highest associated data
RNA
RNA7,001TGCT (4082)view →
Function (RNA)5,049STAD (2045)view →