HMGB3P17

Across TCGA patient cohorts, HMGB3P17 RNA expression is significantly associated with the RNA expression of many other genes, with 2,880 significant associations in total. ACC shows the largest number of these associations.

The most reproducible HMGB3P17-associated genes across cancer lineages are LINC00471, VN1R7P, and RNA5SP30. Each is linked with HMGB3P17 in more than 8 cancer types. Because this analysis shows association rather than direction, both HMGB3P17-to-partner and partner-to-HMGB3P17 results are reported.

Each partner links to its own Q-omics profile. The scatter plot shows the strongest example, HMGB3P17 versus LINC00471 in GBM, with a Pearson correlation of 0.46.

RNA expression associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (HMGB3P17→partner) and Y-score (partner→HMGB3P17) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner gene	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
GBM	LINC00471 →	+0.560	+0.240	<.001	<.001	3	9
STAD	VN1R7P →	+0.579	+0.173	<.001	<.001	3	9
STAD	RNA5SP30 →	+0.860	+0.171	<.001	<.001	3	8
DLBC	RN7SL478P →	+0.511	+0.166	<.001	<.001	3	7
LIHC	OLMALINC →	+0.574	+0.018	.005	.002	1	9
UCS	RN7SL563P →	+0.607	+0.070	.004	.004	3	7

Each partner links to its Q-omics profile. Showing the 6 strongest of 2,880 associations by consensus.

HMGB3P17 vs LINC00471 — GBM

Explore this scatter interactively →