GSKIP

Across TCGA patient cohorts, GSKIP RNA expression is significantly associated with the protein abundance of many other proteins, with 10,387 significant associations in total. BRCA shows the largest number of these associations.

The most reproducible GSKIP-associated proteins across cancer lineages are SETD3, PAPOLA, and SPTLC2. Each is linked with GSKIP in more than 5 cancer types. Because this analysis shows association rather than direction, both GSKIP-to-partner and partner-to-GSKIP results are reported.

Each partner links to its own Q-omics profile. The scatter plot shows the strongest example, GSKIP versus SETD3 in LUAD, with a Pearson correlation of 0.45.

RNA expression associated proteins by consensus

Ranked by combined sampling and lineage consensus. X-score (GSKIP→partner) and Y-score (partner→GSKIP) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner protein	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
LUAD	SETD3 →	+0.315	+0.510	<.001	<.001	3	6
BRCA	PAPOLA →	+0.245	+0.436	.003	.002	3	5
BRCA	SPTLC2 →	+0.361	+0.349	<.001	.002	3	5
BRCA	BAG5 →	+0.256	+0.600	<.001	<.001	3	5
COAD	HSP90AA1 →	+0.260	+0.640	<.001	<.001	3	5
GBM	ITPK1 →	+0.306	+0.280	<.001	.001	3	5

Each partner links to its Q-omics profile. Showing the 6 strongest of 10,387 associations by consensus.

GSKIP vs SETD3 — LUAD

Explore this scatter interactively →