GMIP

RNA expression — cross-omics
Cross-omicsRNA → RNAPatientPairwise association · TCGA cohorts

Across TCGA patient cohorts, GMIP RNA expression is significantly associated with the RNA expression of many other genes, with 18,632 significant associations in total. ACC shows the largest number of these associations.

The most reproducible GMIP-associated genes across cancer lineages are RIPK3, FMNL1, and FCHSD1. Each is linked with GMIP in more than 33 cancer types. Because this analysis shows association rather than direction, both GMIP-to-partner and partner-to-GMIP results are reported.

Each partner links to its own Q-omics profile. The scatter plot shows the strongest example, GMIP versus RIPK3 in UVM, with a Pearson correlation of 0.65.

RNA expression associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (GMIP→partner) and Y-score (partner→GMIP) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.
LineagePartner geneX-scoreY-scorep(X)p(Y)Sampling consensusLineage consensus
UVMRIPK3 →+1.154+0.815<.001<.001333
SARCFMNL1 →+1.413+0.894<.001<.001333
ACCFCHSD1 →+1.116+1.184<.001<.001333
ACCRAB8A →+0.855+1.119<.001<.001234
THYMARHGEF1 →+1.208+1.019<.001<.001333
THYMAKNA →+1.456+0.969<.001<.001332
Each partner links to its Q-omics profile. Showing the 6 strongest of 18,632 associations by consensus.

GMIP vs RIPK3 — UVM

Per-sample scatter of GMIP vs RIPK3 in UVM (Pearson r = 0.65).

Explore this scatter interactively →

Exploration