GLYATL2

Across TCGA cell cohorts, GLYATL2 mutation is significantly associated with the RNA expression of many other genes, with 14 significant associations in total. LUNG_SCLC shows the largest number of these associations.

The most reproducible GLYATL2-associated genes across cancer lineages are OR2T29, SMCP, and TMEM252. Each is linked with GLYATL2 in more than 1 cancer types. Because this analysis shows association rather than direction, both GLYATL2-to-partner and partner-to-GLYATL2 results are reported.

Each partner links to its own Q-omics profile. The box plot shows the strongest example, OR2T29 grouped by GLYATL2-low versus GLYATL2-high in OESOPHAGUS.

mutation associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (GLYATL2→partner) and Y-score (partner→GLYATL2) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner gene	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
OESOPHAGUS	OR2T29 →	+0.116	+4.906	<.001	.006	3	1
LUNG_SCLC	SMCP →	+0.038	+4.058	<.001	.007	3	1
LUNG_SCLC	TMEM252 →	+0.479	+3.788	.006	.006	3	1
LUNG_SCLC	KRTAP20-2 →	+0.630	+3.817	<.001	.004	3	1
LUNG_SCLC	KRTAP19-2 →	+0.102	+4.058	<.001	.007	3	1
LUNG_SCLC	CYP2B6 →	+0.234	+3.925	<.001	.004	3	1

Each partner links to its Q-omics profile. Showing the 6 strongest of 14 associations by consensus.

OR2T29 by GLYATL2 expression — OESOPHAGUS

Explore this box plot interactively →