GIMAP7

mutation — cross-omics
Cross-omicsMUTATION → RNAPatientPairwise association · TCGA cohorts

Across TCGA patient cohorts, GIMAP7 mutation is significantly associated with the RNA expression of many other genes, with 1,388 significant associations in total. UCEC shows the largest number of these associations.

The most reproducible GIMAP7-associated genes across cancer lineages are PSMC3IP, RC3H2, and MINDY2. Each is linked with GIMAP7 in more than 3 cancer types. Because this analysis shows association rather than direction, both GIMAP7-to-partner and partner-to-GIMAP7 results are reported.

Each partner links to its own Q-omics profile. The box plot shows the strongest example, PSMC3IP grouped by GIMAP7-low versus GIMAP7-high in UCEC.

mutation associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (GIMAP7→partner) and Y-score (partner→GIMAP7) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.
LineagePartner geneX-scoreY-scorep(X)p(Y)Sampling consensusLineage consensus
UCECPSMC3IP →+0.681+3.608<.001.00134
UCECRC3H2 →+0.529+2.708.003.00333
UCECMINDY2 →+0.516+3.010.006<.00133
UCECGOLGA1 →+0.484+3.042<.001<.00133
UCECCDK11B →+0.381+2.847.003.00133
BRCAMIR6507 →+0.359+8.055<.001.00732
Each partner links to its Q-omics profile. Showing the 6 strongest of 1,388 associations by consensus.

PSMC3IP by GIMAP7 expression — UCEC

Box plot of PSMC3IP in GIMAP7-low vs GIMAP7-high samples in UCEC.

Explore this box plot interactively →

Exploration