GCNT3

Across TCGA patient cohorts, GCNT3 protein abundance is significantly associated with the RNA expression of many other genes, with 5,100 significant associations in total. COAD shows the largest number of these associations.

The most reproducible GCNT3-associated genes across cancer lineages are TSPAN1, AGR2, and TCN1. Each is linked with GCNT3 in more than 4 cancer types. Because this analysis shows association rather than direction, both GCNT3-to-partner and partner-to-GCNT3 results are reported.

Each partner links to its own Q-omics profile. The scatter plot shows the strongest example, GCNT3 versus TSPAN1 in UCEC, with a Pearson correlation of 0.60.

protein abundance associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (GCNT3→partner) and Y-score (partner→GCNT3) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner gene	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
UCEC	TSPAN1 →	+3.506	+1.041	.003	.001	3	5
UCEC	AGR2 →	+3.276	+0.899	.001	.007	3	4
UCEC	TCN1 →	+3.554	+1.219	.002	.005	3	4
COAD	MCU →	+0.672	+0.736	<.001	<.001	3	4
UCEC	TFF1 →	+4.076	+1.340	<.001	.003	3	4
UCEC	SLC37A1 →	+1.025	+0.933	.009	.007	3	4

Each partner links to its Q-omics profile. Showing the 6 strongest of 5,100 associations by consensus.

GCNT3 vs TSPAN1 — UCEC

Explore this scatter interactively →