GCNT2

Across TCGA patient cohorts, GCNT2 protein abundance is significantly associated with the RNA expression of many other genes, with 16,863 significant associations in total. LSCC shows the largest number of these associations.

The most reproducible GCNT2-associated genes across cancer lineages are SUSD3, FAM110B, and SLC2A3P2. Each is linked with GCNT2 in more than 1 cancer types. Because this analysis shows association rather than direction, both GCNT2-to-partner and partner-to-GCNT2 results are reported.

Each partner links to its own Q-omics profile. The scatter plot shows the strongest example, GCNT2 versus SUSD3 in LUAD, with a Pearson correlation of -0.77.

protein abundance associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (GCNT2→partner) and Y-score (partner→GCNT2) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner gene	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
LUAD	SUSD3 →	-1.123	-0.975	<.001	.005	3	2
LUAD	FAM110B →	-0.933	-1.060	<.001	.001	3	2
UCEC	SLC2A3P2 →	-1.069	-0.452	<.001	.002	3	2
UCEC	TRBV6-6 →	-1.243	-0.444	.005	.001	3	2
LUAD	RPL26P26 →	-1.156	-1.006	.006	.003	3	2
UCEC	MRPL37P1 →	-0.585	-0.319	.001	<.001	3	2

Each partner links to its Q-omics profile. Showing the 6 strongest of 16,863 associations by consensus.

GCNT2 vs SUSD3 — LUAD

Explore this scatter interactively →