GALNT2

Across TCGA patient cohorts, GALNT2 protein abundance is significantly associated with the RNA expression of many other genes, with 15,770 significant associations in total. GBM shows the largest number of these associations.

The most reproducible GALNT2-associated genes across cancer lineages are LOXL2, FNDC3B, and ZNF14. Each is linked with GALNT2 in more than 5 cancer types. Because this analysis shows association rather than direction, both GALNT2-to-partner and partner-to-GALNT2 results are reported.

Each partner links to its own Q-omics profile. The scatter plot shows the strongest example, GALNT2 versus LOXL2 in LSCC, with a Pearson correlation of 0.39.

protein abundance associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (GALNT2→partner) and Y-score (partner→GALNT2) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner gene	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
LSCC	LOXL2 →	+0.981	+0.466	<.001	<.001	3	6
HNSC	FNDC3B →	+0.798	+0.495	<.001	<.001	3	6
GBM	ZNF14 →	-0.578	-0.447	<.001	<.001	3	5
LUAD	EPB41L1 →	-0.607	-0.380	<.001	<.001	3	5
LSCC	HDLBP →	+0.364	+0.441	<.001	<.001	3	5
CCRCC	SEC24D →	+0.559	+0.567	<.001	<.001	3	5

Each partner links to its Q-omics profile. Showing the 6 strongest of 15,770 associations by consensus.

GALNT2 vs LOXL2 — LSCC

Explore this scatter interactively →