FAM204A

protein abundance — cross-omics
Cross-omicsPROTEIN-MS → RNAPatientPairwise association · TCGA cohorts

Across TCGA patient cohorts, FAM204A protein abundance is significantly associated with the RNA expression of many other genes, with 5,055 significant associations in total. LSCC shows the largest number of these associations.

The most reproducible FAM204A-associated genes across cancer lineages are EDRF1, EIF3A, and GLRX3. Each is linked with FAM204A in more than 3 cancer types. Because this analysis shows association rather than direction, both FAM204A-to-partner and partner-to-FAM204A results are reported.

Each partner links to its own Q-omics profile. The scatter plot shows the strongest example, FAM204A versus EDRF1 in UCEC, with a Pearson correlation of 0.37.

protein abundance associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (FAM204A→partner) and Y-score (partner→FAM204A) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.
LineagePartner geneX-scoreY-scorep(X)p(Y)Sampling consensusLineage consensus
UCECEDRF1 →+0.645+0.502.002.00534
UCECEIF3A →+0.816+0.485.002.00324
LSCCGLRX3 →+0.485+0.318.002.00533
UCECTAF5 →+0.633+0.530.002<.00133
LSCCVTI1A →+0.388+0.302<.001<.00133
UCECMETTL3 →+0.733+0.458.009.00733
Each partner links to its Q-omics profile. Showing the 6 strongest of 5,055 associations by consensus.

FAM204A vs EDRF1 — UCEC

Per-sample scatter of FAM204A vs EDRF1 in UCEC (Pearson r = 0.37).

Explore this scatter interactively →

Exploration