F7

mutation — cross-omics
Cross-omicsMUTATION → RNAPatientPairwise association · TCGA cohorts

Across TCGA patient cohorts, F7 mutation is significantly associated with the RNA expression of many other genes, with 2,534 significant associations in total. UCEC shows the largest number of these associations.

The most reproducible F7-associated genes across cancer lineages are POLE2, LPIN2, and ATG4A. Each is linked with F7 in more than 1 cancer types. Because this analysis shows association rather than direction, both F7-to-partner and partner-to-F7 results are reported.

Each partner links to its own Q-omics profile. The box plot shows the strongest example, POLE2 grouped by F7-low versus F7-high in UCEC.

mutation associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (F7→partner) and Y-score (partner→F7) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.
LineagePartner geneX-scoreY-scorep(X)p(Y)Sampling consensusLineage consensus
UCECPOLE2 →+0.472+3.343.008.00532
UCECLPIN2 →+0.533+2.098.006.00332
UCECATG4A →+0.539+3.247<.001<.00132
UCECDOT1L →+0.639+2.606<.001<.00132
UCECBCL7B →+0.385+4.343<.001<.00132
UCECMCM3 →+0.597+2.087.002.00632
Each partner links to its Q-omics profile. Showing the 6 strongest of 2,534 associations by consensus.

POLE2 by F7 expression — UCEC

Box plot of POLE2 in F7-low vs F7-high samples in UCEC.

Explore this box plot interactively →

Exploration