F3

mutation — cross-omics
Cross-omicsMUTATION → PROTEIN-RPPAPatientPairwise association · TCGA cohorts

Across TCGA patient cohorts, F3 mutation is significantly associated with the total protein of many other genes, with 10 significant associations in total. UCEC shows the largest number of these associations.

The most reproducible F3-associated genes across cancer lineages are JNK2, NDRG1_pT346, and p62 Lck ligand. Each is linked with F3 in more than 1 cancer types. Because this analysis shows association rather than direction, both F3-to-partner and partner-to-F3 results are reported.

Each partner links to its own Q-omics profile. The box plot shows the strongest example, JNK2 grouped by F3-low versus F3-high in UCEC.

mutation associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (F3→partner) and Y-score (partner→F3) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.
LineagePartner geneX-scoreY-scorep(X)p(Y)Sampling consensusLineage consensus
UCECJNK2 →+0.309+3.169.004.02031
UCECNDRG1_pT346 →-0.586-3.000.029.03631
UCECp62 Lck ligand →+0.742+3.009<.001.01931
UCECSTAT3_pY705 →-0.578-2.990<.001.03621
UCECBRD4 →+0.416+3.007.007.01921
UCECeIF4E →+0.337+3.169.003.02011
Each partner links to its Q-omics profile. Showing the 6 strongest of 10 associations by consensus.

JNK2 by F3 expression — UCEC

Box plot of JNK2 in F3-low vs F3-high samples in UCEC.

Explore this box plot interactively →

Exploration