ERF

mutation — cross-omics
Cross-omicsMUTATION → RNACell-linePairwise association · TCGA cohorts

Across TCGA cell cohorts, ERF mutation is significantly associated with the RNA expression of many other genes, with 31 significant associations in total. BLOOD_Leukemia shows the largest number of these associations.

The most reproducible ERF-associated genes across cancer lineages are GUCA2A, PRR27, and PRSS58. Each is linked with ERF in more than 1 cancer types. Because this analysis shows association rather than direction, both ERF-to-partner and partner-to-ERF results are reported.

Each partner links to its own Q-omics profile. The box plot shows the strongest example, GUCA2A grouped by ERF-low versus ERF-high in BLOOD_Leukemia.

mutation associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (ERF→partner) and Y-score (partner→ERF) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.
LineagePartner geneX-scoreY-scorep(X)p(Y)Sampling consensusLineage consensus
BLOOD_LeukemiaGUCA2A →+0.031+4.554<.001<.00132
LARGE_INTESTINEPRR27 →+0.156+3.376<.001.00232
PANCREASPRSS58 →+0.092+5.000<.001.00631
CNSFSHB →+0.042+5.321<.001.00531
CNSBPIFB6 →+0.052+5.754<.001.00231
LUNG_NSCLC_LUADRXFP2 →+0.049+4.544<.001.00331
Each partner links to its Q-omics profile. Showing the 6 strongest of 31 associations by consensus.

GUCA2A by ERF expression — BLOOD_Leukemia

Box plot of GUCA2A in ERF-low vs ERF-high samples in BLOOD_Leukemia.

Explore this box plot interactively →

Exploration