EFR3B

mutation — cross-omics
Cross-omicsMUTATION → RNACell-linePairwise association · TCGA cohorts

Across TCGA cell cohorts, EFR3B mutation is significantly associated with the RNA expression of many other genes, with 401 significant associations in total. LARGE_INTESTINE shows the largest number of these associations.

The most reproducible EFR3B-associated genes across cancer lineages are PPP1R2C, OPN1LW, and OPN1MW2. Each is linked with EFR3B in more than 1 cancer types. Because this analysis shows association rather than direction, both EFR3B-to-partner and partner-to-EFR3B results are reported.

Each partner links to its own Q-omics profile. The box plot shows the strongest example, PPP1R2C grouped by EFR3B-low versus EFR3B-high in BLOOD_Lymphoma.

mutation associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (EFR3B→partner) and Y-score (partner→EFR3B) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.
LineagePartner geneX-scoreY-scorep(X)p(Y)Sampling consensusLineage consensus
BLOOD_LymphomaPPP1R2C →+0.397+4.867<.001.00931
BLOOD_LymphomaOPN1LW →+0.039+5.209<.001.00531
BLOOD_LymphomaOPN1MW2 →+0.023+5.209<.001.00531
BLOOD_LymphomaADIG →+0.050+6.247<.001<.00131
BLOOD_LymphomaCCT8L2 →+0.079+5.643<.001.00231
SOFT_TISSUEMORC1 →+0.079+3.635<.001.00731
Each partner links to its Q-omics profile. Showing the 6 strongest of 401 associations by consensus.

PPP1R2C by EFR3B expression — BLOOD_Lymphoma

Box plot of PPP1R2C in EFR3B-low vs EFR3B-high samples in BLOOD_Lymphoma.

Explore this box plot interactively →

Exploration