DSE

protein abundance — cross-omics
Cross-omicsPROTEIN-MS → RNAPatientPairwise association · TCGA cohorts

Across TCGA patient cohorts, DSE protein abundance is significantly associated with the RNA expression of many other genes, with 8,262 significant associations in total. LSCC shows the largest number of these associations.

The most reproducible DSE-associated genes across cancer lineages are TNFAIP6, LGALS1, and COL12A1. Each is linked with DSE in more than 3 cancer types. Because this analysis shows association rather than direction, both DSE-to-partner and partner-to-DSE results are reported.

Each partner links to its own Q-omics profile. The scatter plot shows the strongest example, DSE versus TNFAIP6 in LSCC, with a Pearson correlation of 0.38.

protein abundance associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (DSE→partner) and Y-score (partner→DSE) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.
LineagePartner geneX-scoreY-scorep(X)p(Y)Sampling consensusLineage consensus
LSCCTNFAIP6 →+1.221+0.473<.001<.00134
LSCCLGALS1 →+1.171+0.458<.001<.00133
LUADCOL12A1 →+1.460+0.343<.001.00633
LSCCTSHZ3 →+0.740+0.374.001.00633
LSCCMICAL2 →+1.088+0.590<.001<.00133
LSCCADAMTS12 →+1.077+0.422<.001<.00133
Each partner links to its Q-omics profile. Showing the 6 strongest of 8,262 associations by consensus.

DSE vs TNFAIP6 — LSCC

Per-sample scatter of DSE vs TNFAIP6 in LSCC (Pearson r = 0.38).

Explore this scatter interactively →

Exploration