CX3CR1

protein abundance — cross-omics
Cross-omicsPROTEIN-MS → RNAPatientPairwise association · TCGA cohorts

Across TCGA patient cohorts, CX3CR1 protein abundance is significantly associated with the RNA expression of many other genes, with 1,948 significant associations in total. GBM shows the largest number of these associations.

The most reproducible CX3CR1-associated genes across cancer lineages are CEP78, GIMAP7, and HCLS1. Each is linked with CX3CR1 in more than 1 cancer types. Because this analysis shows association rather than direction, both CX3CR1-to-partner and partner-to-CX3CR1 results are reported.

Each partner links to its own Q-omics profile. The scatter plot shows the strongest example, CX3CR1 versus CEP78 in GBM, with a Pearson correlation of -0.51.

protein abundance associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (CX3CR1→partner) and Y-score (partner→CX3CR1) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.
LineagePartner geneX-scoreY-scorep(X)p(Y)Sampling consensusLineage consensus
GBMCEP78 →-0.626-0.862<.001.00132
UCECGIMAP7 →+1.105+1.772<.001.00632
GBMHCLS1 →+1.170+0.756<.001<.00132
GBMCSF2RA →+1.796+1.329<.001<.00132
GBMPCED1B-AS1 →+1.320+1.407<.001<.00132
UCECLILRA1 →+1.020+1.772.005.00622
Each partner links to its Q-omics profile. Showing the 6 strongest of 1,948 associations by consensus.

CX3CR1 vs CEP78 — GBM

Per-sample scatter of CX3CR1 vs CEP78 in GBM (Pearson r = -0.51).

Explore this scatter interactively →

Exploration