CSPG5

Across TCGA patient cohorts, CSPG5 protein abundance is significantly associated with the RNA expression of many other genes, with 9,026 significant associations in total. GBM shows the largest number of these associations.

The most reproducible CSPG5-associated genes across cancer lineages are YPEL1, SNRPD3, and MAPK1. Each is linked with CSPG5 in more than 1 cancer types. Because this analysis shows association rather than direction, both CSPG5-to-partner and partner-to-CSPG5 results are reported.

Each partner links to its own Q-omics profile. The scatter plot shows the strongest example, CSPG5 versus YPEL1 in GBM, with a Pearson correlation of 0.31.

protein abundance associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (CSPG5→partner) and Y-score (partner→CSPG5) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner gene	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
GBM	YPEL1 →	+0.361	+0.569	.007	<.001	3	1
GBM	SNRPD3 →	+0.354	+0.609	<.001	<.001	3	1
GBM	MAPK1 →	+0.248	+0.418	.003	.001	3	1
GBM	GGT1 →	+0.157	+0.449	<.001	<.001	3	1
GBM	PRODH →	+0.886	+0.428	<.001	<.001	3	1
GBM	CYTH4 →	-0.748	-0.533	<.001	<.001	3	1

Each partner links to its Q-omics profile. Showing the 6 strongest of 9,026 associations by consensus.

CSPG5 vs YPEL1 — GBM

Explore this scatter interactively →