CSNK1G2

protein abundance — cross-omics
Cross-omicsPROTEIN-MS → RNAPatientPairwise association · TCGA cohorts

Across TCGA patient cohorts, CSNK1G2 protein abundance is significantly associated with the RNA expression of many other genes, with 3,117 significant associations in total. LSCC shows the largest number of these associations.

The most reproducible CSNK1G2-associated genes across cancer lineages are SNX2, CTH, and OR1N1. Each is linked with CSNK1G2 in more than 2 cancer types. Because this analysis shows association rather than direction, both CSNK1G2-to-partner and partner-to-CSNK1G2 results are reported.

Each partner links to its own Q-omics profile. The scatter plot shows the strongest example, CSNK1G2 versus SNX2 in LSCC, with a Pearson correlation of -0.29.

protein abundance associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (CSNK1G2→partner) and Y-score (partner→CSNK1G2) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.
LineagePartner geneX-scoreY-scorep(X)p(Y)Sampling consensusLineage consensus
LSCCSNX2 →-0.232-0.199.001.00833
UCECCTH →-0.715-0.284<.001<.00132
UCECOR1N1 →-0.709-0.341.003.00532
UCECMRPL42P6 →-0.738-0.261.009.00532
LSCCRABGAP1L-IT1 →-0.516-0.316.001.00132
OVPKMP4 →-1.723-1.344.009<.00132
Each partner links to its Q-omics profile. Showing the 6 strongest of 3,117 associations by consensus.

CSNK1G2 vs SNX2 — LSCC

Per-sample scatter of CSNK1G2 vs SNX2 in LSCC (Pearson r = -0.29).

Explore this scatter interactively →

Exploration