CSGALNACT2

Across TCGA cell cohorts, CSGALNACT2 mutation is significantly associated with the RNA expression of many other genes, with 120 significant associations in total. LARGE_INTESTINE shows the largest number of these associations.

The most reproducible CSGALNACT2-associated genes across cancer lineages are CA2, GPR63, and WARS2. Each is linked with CSGALNACT2 in more than 1 cancer types. Because this analysis shows association rather than direction, both CSGALNACT2-to-partner and partner-to-CSGALNACT2 results are reported.

Each partner links to its own Q-omics profile. The box plot shows the strongest example, CA2 grouped by CSGALNACT2-low versus CSGALNACT2-high in LARGE_INTESTINE.

mutation associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (CSGALNACT2→partner) and Y-score (partner→CSGALNACT2) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner gene	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
LARGE_INTESTINE	CA2 →	+1.876	+3.212	.001	.006	3	1
LARGE_INTESTINE	GPR63 →	+1.035	+3.212	<.001	.006	3	1
LARGE_INTESTINE	WARS2 →	+0.609	+3.212	.001	.006	3	1
LARGE_INTESTINE	GRSF1 →	+0.546	+3.212	.001	.006	3	1
LARGE_INTESTINE	RINT1 →	+0.493	+3.212	.001	.006	3	1
LARGE_INTESTINE	NGLY1 →	+0.437	+3.064	.003	.009	3	1

Each partner links to its Q-omics profile. Showing the 6 strongest of 120 associations by consensus.

CA2 by CSGALNACT2 expression — LARGE_INTESTINE

Explore this box plot interactively →