CSGALNACT1

Across TCGA cell cohorts, CSGALNACT1 mutation is significantly associated with the RNA expression of many other genes, with 13 significant associations in total. LARGE_INTESTINE shows the largest number of these associations.

The most reproducible CSGALNACT1-associated genes across cancer lineages are BANF2, NPHS2, and NPY. Each is linked with CSGALNACT1 in more than 1 cancer types. Because this analysis shows association rather than direction, both CSGALNACT1-to-partner and partner-to-CSGALNACT1 results are reported.

Each partner links to its own Q-omics profile. The box plot shows the strongest example, BANF2 grouped by CSGALNACT1-low versus CSGALNACT1-high in BLOOD_Lymphoma.

mutation associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (CSGALNACT1→partner) and Y-score (partner→CSGALNACT1) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner gene	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
BLOOD_Lymphoma	BANF2 →	+0.071	+5.643	<.001	.002	3	1
LARGE_INTESTINE	NPHS2 →	+0.070	+3.444	.003	.003	3	1
LARGE_INTESTINE	NPY →	+0.053	+2.874	.006	.008	3	1
LARGE_INTESTINE	RBM46 →	+0.191	+2.994	<.001	.006	3	1
LARGE_INTESTINE	NAA11 →	+0.302	+3.443	.009	.009	3	1
LARGE_INTESTINE	AGRP →	+0.117	+2.994	<.001	.006	3	1

Each partner links to its Q-omics profile. Showing the 6 strongest of 13 associations by consensus.

BANF2 by CSGALNACT1 expression — BLOOD_Lymphoma

Explore this box plot interactively →