CS

Across TCGA patient cohorts, CS RNA expression is significantly associated with the protein abundance of many other proteins, with 17,550 significant associations in total. LSCC shows the largest number of these associations.

The most reproducible CS-associated proteins across cancer lineages are PTGES3, SMARCA4, and SNRPD2. Each is linked with CS in more than 5 cancer types. Because this analysis shows association rather than direction, both CS-to-partner and partner-to-CS results are reported.

Each partner links to its own Q-omics profile. The scatter plot shows the strongest example, CS versus PTGES3 in LSCC, with a Pearson correlation of 0.62.

RNA expression associated proteins by consensus

Ranked by combined sampling and lineage consensus. X-score (CS→partner) and Y-score (partner→CS) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner protein	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
LSCC	PTGES3 →	+0.311	+0.571	<.001	<.001	3	6
LSCC	SMARCA4 →	+0.356	+0.369	<.001	<.001	3	6
GBM	SNRPD2 →	+0.214	+0.209	.005	.009	3	6
HNSC	C1orf35 →	+0.446	+0.783	<.001	<.001	3	6
LSCC	CDK9 →	+0.317	+0.519	<.001	<.001	3	6
LSCC	USP39 →	+0.364	+0.508	<.001	<.001	3	5

Each partner links to its Q-omics profile. Showing the 6 strongest of 17,550 associations by consensus.

CS vs PTGES3 — LSCC

Explore this scatter interactively →