Across TCGA pan-cancer cohorts, COQ9 mass-spec protein differs between tumor and matched normal tissue in 4 of 18 cancer types tested, making tumor–normal expression one of COQ9’s most consistent transcriptional readouts.
The strongest signal is observed in clear cell renal cell carcinoma (CCRCC), where COQ9 mass-spec protein is repressed in tumor relative to normal tissue. In most cancer types COQ9 is over-expressed in tumor, although a few such as CCRCC and COAD show the opposite, repressed pattern.
CCRCC, COAD, and HNSC are the cancer types where COQ9 tumor–normal differential expression is most reproducible.