COL9A3

Across TCGA patient cohorts, COL9A3 mutation is significantly associated with the RNA expression of many other genes, with 1,933 significant associations in total. UCEC shows the largest number of these associations.

The most reproducible COL9A3-associated genes across cancer lineages are LINC02559, NF1P6, and CDRT15P7. Each is linked with COL9A3 in more than 2 cancer types. Because this analysis shows association rather than direction, both COL9A3-to-partner and partner-to-COL9A3 results are reported.

Each partner links to its own Q-omics profile. The box plot shows the strongest example, LINC02559 grouped by COL9A3-low versus COL9A3-high in HNSC.

mutation associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (COL9A3→partner) and Y-score (partner→COL9A3) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner gene	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
HNSC	LINC02559 →	+0.964	+4.505	<.001	.009	3	3
CESC	NF1P6 →	+0.248	+5.342	<.001	.002	3	3
CESC	CDRT15P7 →	+0.058	+4.669	<.001	.007	3	3
SKCM	MIR6731 →	+0.327	+1.958	.001	.001	3	2
BRCA	OR4V1P →	+0.223	+6.038	<.001	.001	3	2
STAD	TTTY8 →	+0.024	+5.012	<.001	.003	3	2

Each partner links to its Q-omics profile. Showing the 6 strongest of 1,933 associations by consensus.

LINC02559 by COL9A3 expression — HNSC

Explore this box plot interactively →