CNTNAP4

Across TCGA patient cohorts, CNTNAP4 RNA expression is significantly associated with the RNA expression of many other genes, with 10,970 significant associations in total. TGCT shows the largest number of these associations.

The most reproducible CNTNAP4-associated genes across cancer lineages are LINC00648, GABRG2, and CDH18. Each is linked with CNTNAP4 in more than 16 cancer types. Because this analysis shows association rather than direction, both CNTNAP4-to-partner and partner-to-CNTNAP4 results are reported.

Each partner links to its own Q-omics profile. The scatter plot shows the strongest example, CNTNAP4 versus LINC00648 in ESCA, with a Pearson correlation of 0.65.

RNA expression associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (CNTNAP4→partner) and Y-score (partner→CNTNAP4) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner gene	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
ESCA	LINC00648 →	+0.942	+0.429	<.001	<.001	3	17
GBM	GABRG2 →	+1.497	+1.044	<.001	<.001	3	16
PCPG	CDH18 →	+0.655	+1.164	<.001	<.001	3	16
PCPG	FSTL5 →	+1.634	+1.289	<.001	.001	3	15
LIHC	FAM133A →	+1.522	+0.806	<.001	<.001	3	15
ESCA	MIR548XHG →	+0.889	+0.571	<.001	<.001	3	15

Each partner links to its Q-omics profile. Showing the 6 strongest of 10,970 associations by consensus.

CNTNAP4 vs LINC00648 — ESCA

Explore this scatter interactively →