CNTN3

Across TCGA patient cohorts, CNTN3 protein abundance is significantly associated with the RNA expression of many other genes, with 2,879 significant associations in total. GBM shows the largest number of these associations.

The most reproducible CNTN3-associated genes across cancer lineages are LINC02712, PADI1, and CNTNAP5. Each is linked with CNTN3 in more than 1 cancer types. Because this analysis shows association rather than direction, both CNTN3-to-partner and partner-to-CNTN3 results are reported.

Each partner links to its own Q-omics profile. The scatter plot shows the strongest example, CNTN3 versus LINC02712 in GBM, with a Pearson correlation of 0.40.

protein abundance associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (CNTN3→partner) and Y-score (partner→CNTN3) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner gene	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
GBM	LINC02712 →	+0.752	+0.593	.001	<.001	3	2
BRCA	PADI1 →	+0.120	+1.538	.004	.006	3	1
BRCA	CNTNAP5 →	+0.105	+1.448	<.001	.006	3	1
BRCA	POU6F2-AS2 →	+0.324	+1.448	<.001	.006	3	1
BRCA	LINC01322 →	+0.245	+1.448	<.001	.006	3	1
BRCA	CERNA3 →	+0.715	+1.448	<.001	.006	3	1

Each partner links to its Q-omics profile. Showing the 6 strongest of 2,879 associations by consensus.

CNTN3 vs LINC02712 — GBM

Explore this scatter interactively →