CNTN3

RNA expression — cross-omics
Cross-omicsRNA → RNACell-linePairwise association · TCGA cohorts

Across TCGA cell cohorts, CNTN3 RNA expression is significantly associated with the RNA expression of many other genes, with 2,430 significant associations in total. SOFT_TISSUE shows the largest number of these associations.

The most reproducible CNTN3-associated genes across cancer lineages are PKIA, AMOT, and OR51Q1. Each is linked with CNTN3 in more than 2 cancer types. Because this analysis shows association rather than direction, both CNTN3-to-partner and partner-to-CNTN3 results are reported.

Each partner links to its own Q-omics profile. The scatter plot shows the strongest example, CNTN3 versus PKIA in SOFT_TISSUE, with a Pearson correlation of 0.47.

RNA expression associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (CNTN3→partner) and Y-score (partner→CNTN3) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.
LineagePartner geneX-scoreY-scorep(X)p(Y)Sampling consensusLineage consensus
SOFT_TISSUEPKIA →+2.080+0.718<.001<.00133
LUNG_SCLCAMOT →+1.422+1.068<.001<.00133
BLOOD_MyelomaOR51Q1 →+0.063+0.699<.001<.00132
BLOOD_MyelomaOR51B6 →+0.073+0.531<.001.00132
OVARYDCAF12L2 →+0.663+0.363.001<.00132
SOFT_TISSUEDUSP4 →+1.737+0.812.002<.00132
Each partner links to its Q-omics profile. Showing the 6 strongest of 2,430 associations by consensus.

CNTN3 vs PKIA — SOFT_TISSUE

Per-sample scatter of CNTN3 vs PKIA in SOFT_TISSUE (Pearson r = 0.47).

Explore this scatter interactively →

Exploration