CLCNKB

mutation — cross-omics
Cross-omicsMUTATION → RNACell-linePairwise association · TCGA cohorts

Across TCGA cell cohorts, CLCNKB mutation is significantly associated with the RNA expression of many other genes, with 29 significant associations in total. LARGE_INTESTINE shows the largest number of these associations.

The most reproducible CLCNKB-associated genes across cancer lineages are OR51T1, GSG1L2, and OR1A2. Each is linked with CLCNKB in more than 1 cancer types. Because this analysis shows association rather than direction, both CLCNKB-to-partner and partner-to-CLCNKB results are reported.

Each partner links to its own Q-omics profile.

mutation associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (CLCNKB→partner) and Y-score (partner→CLCNKB) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.
LineagePartner geneX-scoreY-scorep(X)p(Y)Sampling consensusLineage consensus
BLOOD_LeukemiaOR51T1 →+0.071+4.922<.001.00931
BLOOD_LeukemiaGSG1L2 →+0.058+5.969<.001.00131
LUNG_NSCLC_LUADOR1A2 →+0.017+5.266<.001.00131
LUNG_NSCLC_LUADCCL18 →+0.026+4.212.005.00731
LARGE_INTESTINEGRM6 →+0.090+3.115<.001.00431
LARGE_INTESTINEADRA1A →+0.122+3.103.005.00431
Each partner links to its Q-omics profile. Showing the 6 strongest of 29 associations by consensus.

Exploration