CKAP2

Across TCGA cell cohorts, CKAP2 mutation is significantly associated with the RNA expression of many other genes, with 262 significant associations in total. LARGE_INTESTINE shows the largest number of these associations.

The most reproducible CKAP2-associated genes across cancer lineages are DPRX, GML, and LGI1. Each is linked with CKAP2 in more than 1 cancer types. Because this analysis shows association rather than direction, both CKAP2-to-partner and partner-to-CKAP2 results are reported.

Each partner links to its own Q-omics profile. The box plot shows the strongest example, DPRX grouped by CKAP2-low versus CKAP2-high in BLOOD_Leukemia.

mutation associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (CKAP2→partner) and Y-score (partner→CKAP2) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner gene	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
BLOOD_Leukemia	DPRX →	+0.166	+5.060	<.001	.001	3	2
BLOOD_Leukemia	GML →	+0.057	+4.152	.007	.009	3	1
BLOOD_Leukemia	LGI1 →	+0.096	+4.539	<.001	.007	3	1
BLOOD_Leukemia	GFRA4 →	+0.295	+4.409	.001	.005	3	1
BLOOD_Leukemia	KERA →	+0.006	+4.551	.002	.004	3	1
BLOOD_Leukemia	LRIT1 →	+0.041	+5.269	<.001	<.001	3	1

Each partner links to its Q-omics profile. Showing the 6 strongest of 262 associations by consensus.

DPRX by CKAP2 expression — BLOOD_Leukemia

Explore this box plot interactively →