CHP2

Across TCGA cell cohorts, CHP2 RNA expression is significantly associated with the RNA expression of many other genes, with 3,137 significant associations in total. LARGE_INTESTINE shows the largest number of these associations.

The most reproducible CHP2-associated genes across cancer lineages are PGLYRP3, PIWIL3, and C10orf99. Each is linked with CHP2 in more than 3 cancer types. Because this analysis shows association rather than direction, both CHP2-to-partner and partner-to-CHP2 results are reported.

Each partner links to its own Q-omics profile. The scatter plot shows the strongest example, CHP2 versus PGLYRP3 in URINARY_TRACT, with a Pearson correlation of 0.52.

RNA expression associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (CHP2→partner) and Y-score (partner→CHP2) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner gene	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
URINARY_TRACT	PGLYRP3 →	+0.790	+1.616	.002	.001	3	4
CNS	PIWIL3 →	+0.066	+0.043	.006	<.001	3	3
LARGE_INTESTINE	C10orf99 →	+2.634	+1.705	<.001	<.001	3	3
LARGE_INTESTINE	FAM3D →	+2.370	+1.289	<.001	<.001	3	3
OVARY	CSTL1 →	+0.194	+0.570	<.001	.006	3	3
LARGE_INTESTINE	RETNLB →	+0.950	+1.278	.001	<.001	3	3

Each partner links to its Q-omics profile. Showing the 6 strongest of 3,137 associations by consensus.

CHP2 vs PGLYRP3 — URINARY_TRACT

Explore this scatter interactively →