CHN2

Across TCGA patient cohorts, CHN2 RNA expression is significantly associated with the protein abundance of many other proteins, with 10,535 significant associations in total. PDAC shows the largest number of these associations.

The most reproducible CHN2-associated proteins across cancer lineages are VPS39, CPVL, and GRAP2_S159. Each is linked with CHN2 in more than 3 cancer types. Because this analysis shows association rather than direction, both CHN2-to-partner and partner-to-CHN2 results are reported.

Each partner links to its own Q-omics profile. The scatter plot shows the strongest example, CHN2 versus VPS39 in HNSC, with a Pearson correlation of 0.29.

RNA expression associated proteins by consensus

Ranked by combined sampling and lineage consensus. X-score (CHN2→partner) and Y-score (partner→CHN2) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner protein	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
HNSC	VPS39 →	+0.189	+0.447	<.001	.005	3	4
HNSC	CPVL →	+0.535	+0.428	<.001	<.001	3	4
CCRCC	GRAP2_S159 →	+0.766	+0.487	.001	<.001	3	4
HNSC	NFATC2 →	+0.368	+0.422	<.001	<.001	3	4
LSCC	EGFR →	-0.737	-0.536	<.001	<.001	3	4
GBM	RTN1 →	+0.588	+0.498	<.001	.001	3	4

Each partner links to its Q-omics profile. Showing the 6 strongest of 10,535 associations by consensus.

CHN2 vs VPS39 — HNSC

Explore this scatter interactively →