CHGA

Across TCGA cell cohorts, CHGA RNA expression is significantly associated with the RNA expression of many other genes, with 7,378 significant associations in total. BLOOD_Lymphoma shows the largest number of these associations.

The most reproducible CHGA-associated genes across cancer lineages are SCG3, FBXL16, and BSN. Each is linked with CHGA in more than 4 cancer types. Because this analysis shows association rather than direction, both CHGA-to-partner and partner-to-CHGA results are reported.

Each partner links to its own Q-omics profile. The scatter plot shows the strongest example, CHGA versus SCG3 in LUNG_SCLC, with a Pearson correlation of 0.86.

RNA expression associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (CHGA→partner) and Y-score (partner→CHGA) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner gene	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
LUNG_SCLC	SCG3 →	+2.488	+3.180	<.001	<.001	3	5
LUNG_SCLC	FBXL16 →	+2.116	+4.154	<.001	<.001	3	4
LUNG_SCLC	BSN →	+1.734	+4.917	<.001	<.001	3	4
BLOOD_Lymphoma	GZF1 →	+0.972	+0.161	<.001	<.001	3	4
LUNG_SCLC	DLGAP3 →	+1.744	+4.047	.002	.001	3	4
SOFT_TISSUE	KIF1A →	+2.123	+0.359	<.001	<.001	3	4

Each partner links to its Q-omics profile. Showing the 6 strongest of 7,378 associations by consensus.

CHGA vs SCG3 — LUNG_SCLC

Explore this scatter interactively →