CCDC142

Across TCGA patient cohorts, CCDC142 mutation is significantly associated with the RNA expression of many other genes, with 3,156 significant associations in total. UCEC shows the largest number of these associations.

The most reproducible CCDC142-associated genes across cancer lineages are LINC01203, TUBB8P4, and RNU6-377P. Each is linked with CCDC142 in more than 2 cancer types. Because this analysis shows association rather than direction, both CCDC142-to-partner and partner-to-CCDC142 results are reported.

Each partner links to its own Q-omics profile. The box plot shows the strongest example, LINC01203 grouped by CCDC142-low versus CCDC142-high in SKCM.

mutation associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (CCDC142→partner) and Y-score (partner→CCDC142) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner gene	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
SKCM	LINC01203 →	+0.918	+2.236	<.001	.008	3	3
SKCM	TUBB8P4 →	+0.020	+3.005	.004	.001	3	2
SKCM	RNU6-377P →	+0.542	+3.208	<.001	<.001	3	2
SKCM	IGHVII-46-1 →	+1.018	+2.323	<.001	.005	3	2
SKCM	DEPDC1P1 →	+0.031	+2.328	.004	.006	3	2
SKCM	UBE2MP1 →	+0.527	+3.478	.001	.002	3	2

Each partner links to its Q-omics profile. Showing the 6 strongest of 3,156 associations by consensus.

LINC01203 by CCDC142 expression — SKCM

Explore this box plot interactively →