CAPN9

Across TCGA cell cohorts, CAPN9 RNA expression is significantly associated with the RNA expression of many other genes, with 7,442 significant associations in total. BREAST shows the largest number of these associations.

The most reproducible CAPN9-associated genes across cancer lineages are TOX3, RORC, and C11orf52. Each is linked with CAPN9 in more than 7 cancer types. Because this analysis shows association rather than direction, both CAPN9-to-partner and partner-to-CAPN9 results are reported.

Each partner links to its own Q-omics profile. The scatter plot shows the strongest example, CAPN9 versus TOX3 in LUNG_SCLC, with a Pearson correlation of 0.40.

RNA expression associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (CAPN9→partner) and Y-score (partner→CAPN9) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner gene	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
LUNG_SCLC	TOX3 →	+2.627	+0.838	.002	.005	2	8
BREAST	RORC →	+2.268	+1.341	<.001	<.001	3	6
BREAST	C11orf52 →	+2.544	+1.739	<.001	<.001	3	6
SOFT_TISSUE	LRRC10B →	+1.553	+0.160	<.001	<.001	3	6
BREAST	CKMT1A →	+2.279	+1.573	<.001	<.001	3	6
BREAST	TFF3 →	+5.223	+1.737	<.001	<.001	3	5

Each partner links to its Q-omics profile. Showing the 6 strongest of 7,442 associations by consensus.

CAPN9 vs TOX3 — LUNG_SCLC

Explore this scatter interactively →