ARID3A

Across TCGA patient cohorts, ARID3A RNA expression is significantly associated with the RNA expression of many other genes, with 18,898 significant associations in total. UVM shows the largest number of these associations.

The most reproducible ARID3A-associated genes across cancer lineages are PLAGL2, ARID3B, and TM9SF4. Each is linked with ARID3A in more than 31 cancer types. Because this analysis shows association rather than direction, both ARID3A-to-partner and partner-to-ARID3A results are reported.

Each partner links to its own Q-omics profile. The scatter plot shows the strongest example, ARID3A versus PLAGL2 in COAD, with a Pearson correlation of 0.76.

RNA expression associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (ARID3A→partner) and Y-score (partner→ARID3A) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner gene	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
COAD	PLAGL2 →	+1.328	+1.464	<.001	<.001	3	32
DLBC	ARID3B →	+1.517	+1.860	<.001	<.001	3	32
DLBC	TM9SF4 →	+0.860	+1.528	<.001	.001	3	32
ACC	DNMT3A →	+1.300	+1.022	<.001	<.001	3	31
SCLC	KDM6B →	+1.095	+0.751	<.001	.002	3	31
ACC	ZBTB39 →	+1.070	+1.039	<.001	<.001	3	31

Each partner links to its Q-omics profile. Showing the 6 strongest of 18,898 associations by consensus.

ARID3A vs PLAGL2 — COAD

Explore this scatter interactively →