ascorbate (vitamin C)

response biomarkers — cross-omics
anti-oxidant proteinsDrug responseDRUG → RNACell lineback-up solution from YWKim

Across CCLE and GDSC cell-line panels, response to ascorbate (vitamin C) is significantly associated with the RNA expression of multiple genes, with PANCREAS cell lines showing a particularly strong set of associations.

The most reproducible ascorbate (vitamin C) response-associated genes across cancer lineages are PDCD2L, WDR17, and ABHD2, each associated with drug response in up to 9 lineages. Since the analysis identifies associations rather than directional relationships, both response-to-biomarker and biomarker-to-response views are provided.

Each biomarker is linked to its corresponding Q-omics profile. The scatter plot shows the strongest observed association, ascorbate (vitamin C) response versus PDCD2L RNA expression in PANCREAS (Pearson r = 0.54).

Rna expression biomarkers of ascorbate (vitamin C) response

Ranked by combined sampling and lineage consensus. X-score (response→biomarker) and Y-score (biomarker→response) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.
LineagePartner geneX-scoreY-scorep(X)p(Y)Sampling consensusLineage consensus
PANCREASPDCD2L →+0.710+0.718.012.00639
OVARYWDR17 →+1.155+0.637.002.00339
STOMACHABHD2 →-2.130-0.781.002.00838
BONEAOPEP →-2.007-0.772.018.02638
BLOOD_LymphomaSNRK →-0.893-0.743.001.00338
PANCREASADGRF1 →-2.378-0.415.032.02438
Each biomarker links to its Q-omics profile. Showing the 6 strongest associations by consensus.

ascorbate (vitamin C) response vs PDCD2L — PANCREAS

Per-cell-line scatter of ascorbate (vitamin C) response vs PDCD2L RNA expression in PANCREAS.

Explore this scatter interactively →

Exploration